Publications from the last 10 years. For a complete listing, search Borkovich KA on Pubmed

LA Collier, Y Oza, M Quinn, AJ Carrillo, M Campbell and KA Borkovich. 2026. Heterotrimeric G-proteins and cAMP regulate gene expression during growth on cellulose in Neurospora crassa. mBio e03720-25. doi/10.1128/mbio.03720-25

AJ Carrillo, L Halilovic, M Quinn and KA Borkovich. 2025. Targeted polar metabolomics data for Neurospora crassa wild type and mutant strains cultured on glucose. Microbiology Resource Announcements 14(12):e0103025. doi.org/10.1128/mra.01030-25

M Quinn, AJ Carrillo, L Halilovic and KA Borkovich. 2024. RNAseq and targeted metabolomics implicate RIC8 in regulation of energy homeostasis, amino acid compartmentation and asexual development in Neurospora crassa. mBio, https://doi.org/10.1128/mbio.03133

DA Wadford, N Baumrind, EF Baylis, JM Bell, EL Bouchard, M Crumpler, EM Foote, S Gilliam, CA Glaser, JK Hacker, K Ledin, SL Messenger, C Morales, EA Smith, JR Sevinsky, RB Corbett-Detig, J DeRisi, K Jacobson, and the COVIDNet Consortium. 2023. Implementation of California COVIDNet – a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance.  Frontiers in Public Health 11:1239614.

D Baruah, C Noche, K Marak, A Roy, D Gohain, A Kumar, P Das, KA Borkovich and R. Tamuli. 2023. Multiple calcium signaling genes play a critical role in the Neurospora crassa circadian clock. FEMS Microbiology Letters 370: 1-10.

B He, Q Cai, A Weiberg, W Li, A-P Cheng, S Ouyang, KA Borkovich, J Stajich, C Abreu-Goodger and H Jin. 2023. Botrytis cinerea small RNAs are associated with tomato AGO1 and can silence tomato target genes, supporting cross-kingdom RNAi. BioRxiv, doi: https://doi.org/10.1101/2022.12.30.522274

IE Cabrera, Y Oza, AJ Carrillo, LA Collier SJ Wright, L Li and KA Borkovich. 2022. Regulator of G protein signaling proteins control growth, development and cellulase production in Neurospora crassa. J of Fungi 8 (10):1076.

AJ Carrillo, L Halilovic, Hur, M Kirkwood, JS and KA Borkovich. 2022. Targeted metabolomics using LC-MS in Neurospora crassa. Current Protocols 2(5) e454.

H-M Ji, H-Y Mao, S-J Li, T Feng, Z-Y Zhang, L Cheng, S-J Luo, KA Borkovich, S-Q Ouyang. 2021. Fol-milR1, a pathogenicity factor of Fusarium oxysporum, confers tomato wilt disease resistance by impairing host immune responses. New Phytologist 232(2):705-718.

Gao Y, Li SJ, Zhang SW, Feng T, Zhang ZY, Luo SJ, Mao HY, Borkovich KA, Ouyang SQ. 2021. SlymiR482e-3p mediates tomato wilt disease by modulating ethylene response pathway.  Plant Biotechnol J. 19(1):17-19.

R Hai, M Collin, S Tsau, D. Raygoza, J Morrison, AJ Carrillo, LA Collier, W Bayubay, K Han, I Kaloshian, KA Borkovich. 2021. Laboratory-Developed Test for SARS-CoV-2 Using Saliva Samples at the University of California, Riverside. medRxiv 2021.02.21.21251691

Collier LA, Ghosh A, Borkovich KA. 2020. Heterotrimeric G protein signaling is required for cellulose degradation in Neurospora crassa. mBio 11(6):e02419-20.

Carrillo AJ, Cabrera IE, Spasojevic MJ, Schacht P, Stajich JE, Borkovich KA. 2020. Clustering analysis of large-scale phenotypic data in the model filamentous fungus Neurospora crassa. BMC Genomics 2;21(1):755.

Crivelente Horta, MA, Thieme, N, Gao, Y, Burnum-Johnson, KE, Nicora, CD, Gritsenko, MA, Lipton, M, Mohanraj, K, de Assis, LJ, Lin, L, Tian, C, Braus, GH, Borkovich, KA, Schmoll, M, Larrondo, LF, Samal, A, Goldman, GH, Benz, JP. 2019. Broad substrate-specific phosphorylation events are associated with the initial stage of plant cell wall recognition in Neurospora crassa. Frontiers in Microbiology 10:2317.

Garud, A, Carrillo, AJ, Collier, LA, Ghosh, A, Kim, JD, Lopez-Lopez, B, Ouyang, S, Borkovich, KA. 2019. Genetic relationships between the RACK1 homolog cpc-2 and heterotrimeric G protein subunit genes in Neurospora crassa. PLoS ONE 14: e022333.

Li, B, Gao, Y, Mao, H-Y, Borkovich, KA and Ouyang, S. 2019. The SNARE protein FolVam7 mediates intracellular trafficking to regulate conidiogenesis and pathogenicity in Fusarium oxysporum f. sp. lycopersici. Environmental Microbiology 21:2696-2706.

Ji, H, Zhao, M, Gao, Y, Cao, X, Mao, H, Zhou, Y, Fan, W, Borkovich, KA, Ouyang, S, Liu, P. 2018. FRG3, a target of slmiR482e-3p, provides resistance against the fungal pathogen Fusarium oxysporum in tomato. Frontiers in Plant Science 9:11.

Carrillo, AJ, Schacht, PC, Cabrera, IE, Blahut, J, Prudhomme, L, Dietrich, S, Bekman, T, Mei, J, Carrera, C, Chen, V, Clark, I, Fierro, G, Ganzen, L, Orellana, J, Wise, S, Yang, K, Zhong, H, Borkovich, KA. 2017. Functional Profiling of Transcription Factor Genes in Neurospora crassa. G3: Genes|Genomes|Genetics 7: 2945-2956.

Tamuli R, Deka R, Borkovich KA. 2016. Calcineurin subunits A and B interact to regulate growth and asexual and sexual development in Neurospora crassa. PLoS ONE 11:e0151867.