Neurospora crassa germinating spores



Publications from the last 10 years. For a complete listing, search Borkovich KA on Pubmed

DA Wadford, N Baumrind, EF Baylis, JM Bell, EL Bouchard, M Crumpler, EM Foote, S Gilliam, CA Glaser, JK Hacker, K Ledin, SL Messenger, C Morales, EA Smith, JR Sevinsky, RB Corbett-Detig, J DeRisi, K Jacobson, and the COVIDNet Consortium. Implementation of California COVIDNet – a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance. 2023Frontiers in Public Health 11:1239614.

D Baruah, C Noche, K Marak, A Roy, D Gohain, A Kumar, P Das, KA Borkovich and R. Tamuli. 2023. Multiple calcium signaling genes play a critical role in the Neurospora crassa circadian clock. FEMS Microbiology Letters 370: 1-10.

IE Cabrera, Y Oza, AJ Carrillo, LA Collier SJ Wright, L Li and KA Borkovich2022. Regulator of G protein signaling proteins control growth, development and cellulase production in Neurospora crassaJ of Fungi 8 (10):1076.

AJ Carrillo, L Halilovic, Hur, M Kirkwood, JS and KA Borkovich2022. Targeted metabolomics using LC-MS in Neurospora crassa. Current Protocols 2(5) e454.

H-M Ji, H-Y Mao, S-J Li, T Feng, Z-Y Zhang, L Cheng, S-J Luo, KA Borkovich, S-Q Ouyang. 2021. Fol-milR1, a pathogenicity factor of Fusarium oxysporum, confers tomato wilt disease resistance by impairing host immune responses. New Phytologist 232(2):705-718.

Gao Y, Li SJ, Zhang SW, Feng T, Zhang ZY, Luo SJ, Mao HY, Borkovich KA, Ouyang SQ. 2021. SlymiR482e-3p mediates tomato wilt disease by modulating ethylene response pathway.  Plant Biotechnol J. 19(1):17-19.

R Hai, M Collin, S Tsau, D. Raygoza, J Morrison, AJ Carrillo, LA Collier, W Bayubay, K Han, I Kaloshian, KA Borkovich. 2021. Laboratory-Developed Test for SARS-CoV-2 Using Saliva Samples at the University of California, Riverside. medRxiv 2021.02.21.21251691

Collier LA, Ghosh A, Borkovich KA2020. Heterotrimeric G protein signaling is required for cellulose degradation in Neurospora crassa. mBio 11(6):e02419-20.

Carrillo AJ, Cabrera IE, Spasojevic MJ, Schacht P, Stajich JE, Borkovich KA. 2020. Clustering analysis of large-scale phenotypic data in the model filamentous fungus Neurospora crassa. BMC Genomics 2;21(1):755.

Crivelente Horta, MA, Thieme, N, Gao, Y, Burnum-Johnson, KE, Nicora, CD, Gritsenko, MA, Lipton, M, Mohanraj, K, de Assis, LJ, Lin, L, Tian, C, Braus, GH, Borkovich, KA, Schmoll, M, Larrondo, LF, Samal, A, Goldman, GH, Benz, JP. 2019. Broad substrate-specific phosphorylation events are associated with the initial stage of plant cell wall recognition in Neurospora crassa. Frontiers in Microbiology 10:2317.

Garud, A, Carrillo, AJ, Collier, LA, Ghosh, A, Kim, JD, Lopez-Lopez, B, Ouyang, S, Borkovich, KA. 2019. Genetic relationships between the RACK1 homolog cpc-2 and heterotrimeric G protein subunit genes in Neurospora crassaPLoS ONE 14: e022333.

Li, B, Gao, Y, Mao, H-Y, Borkovich, KA and Ouyang, S. 2019. The SNARE protein FolVam7 mediates intracellular trafficking to regulate conidiogenesis and pathogenicity in Fusarium oxysporum f. sp. lycopersici. Environmental Microbiology 21:2696-2706.

Ji, H, Zhao, M, Gao, Y, Cao, X, Mao, H, Zhou, Y, Fan, W, Borkovich, KA, Ouyang, S, Liu, P. 2018FRG3, a target of slmiR482e-3p, provides resistance against the fungal pathogen Fusarium oxysporum in tomato. Frontiers in Plant Science 9:11.

Carrillo, AJ, Schacht, PC, Cabrera, IE, Blahut, J, Prudhomme, L, Dietrich, S, Bekman, T, Mei, J, Carrera, C, Chen, V, Clark, I, Fierro, G, Ganzen, L, Orellana, J, Wise, S, Yang, K, Zhong, H, Borkovich, KA. 2017. Functional Profiling of Transcription Factor Genes in Neurospora crassaG3: Genes|Genomes|Genetics 7: 2945-2956.

Tamuli R, Deka R, Borkovich KA. 2016. Calcineurin subunits A and B interact to regulate growth and asexual and sexual development in Neurospora crassaPLoS ONE 11:e0151867.

Cabrera IE, Pacentine IV, Lim A, Guerrero N, Krystofova S, Li L, et al. Borkovich KA. 2015. Global Analysis of Predicted G Protein Coupled Receptor Genes in the Filamentous Fungus, Neurospora crassaG3:Genes|Genomes|Genetics 5:2729–2743.

Ouyang S, Beecher CN, Wang K, Larive CK, Borkovich KA. 2015. Metabolic Impacts of Using Nitrogen and Copper-Regulated Promoters to Regulate Gene Expression in Neurospora crassaG3: Genes|Genomes|Genetics 5:1899–1908.

Cabrera IE, Tambo AL, Cruz A, Guan BX, Bhanu, B, Borkovich KA. 2015. Quantitative analyses using Video Bioinformatics and image analysis tools during growth and development in the multicellular fungus, Neurospora crassa. Video Bioinformatics. Editors: Bir Bhanu, Prue Talbot. Springer, Computational Biology, Image Processing, Computer Vision, and Pattern Recognition. p.237-250.

Park G, Ouyang S, Borkovich KA2016. High-throughput construction of genetically modified fungi. Gene expression systems of fungi: applications and advancements. Editors: Monika Schmoll, Christoph Dattenbock. Springer Science+Business Media. p.241-252.

Deka R, Ghosh A, Tamuli R, Borkovich KA. 2016. Heterotrimeric G Proteins. The Mycota: Biochemistry and Molecular Biology, 3rd edition. Editors: Dirk Hoffmeister. Springer. Vol. III: p.119-144.

Ouyang S, Park G, Atamian HS, Han C, Stajich JE, Kaloshian I, Borkovich KA. 2014. MicroRNAs suppress NB domain genes in tomato that confer resistance to Fusarium oxysporumPLoS Pathogens 10: e1004464.

Ghosh A, Servin JA, Park G, Borkovich KA. 2014. Global analysis of serine/threonine and tyrosine protein phosphatase catalytic subunit genes in Neurospora crassa reveals interplay between phosphatases and the p38 MAPK. G3: Genes|Genomes|Genetics:349-365.

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